NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208157_1014581

Scaffold Ga0208157_1014581


Overview

Basic Information
Taxon OID3300025086 Open in IMG/M
Scaffold IDGa0208157_1014581 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2508
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046070Metagenome / Metatranscriptome152N
F048244Metagenome / Metatranscriptome148Y
F056151Metagenome / Metatranscriptome138Y
F101084Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0208157_10145811F056151N/ALKNLKTNHYNSKIIKTKKLKLNNNTYLGFLINDLQNIKLINNLKIENVIEFNLKGLTFINKNNIKKSTLQSI
Ga0208157_101458110F046070N/AMNLKRIKELRNVVHDAQTKMDLISKRVMQGGLSLDQQILHLDNFAANQSRHMLSNEELYKLLKNE
Ga0208157_10145816F048244N/AMKVELTKKEIDRIYFDLKNYVKTTYYVDRLNELSENDKEECKIELELIEKFSKL
Ga0208157_10145818F101084N/AMYRDDLVYDFNDEMWNLYHNGTINNEDDFWNEKNTWIDNQVIYTYECKQICDKLDYDIFEEHDIYGKANNWSQAAYAAIYDLLNDHNDALTYDEMKLQEQEANA

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