NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208794_1000700

Scaffold Ga0208794_1000700


Overview

Basic Information
Taxon OID3300025093 Open in IMG/M
Scaffold IDGa0208794_1000700 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18959
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameAtlantic Ocean: Gulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025388Metagenome / Metatranscriptome202N
F042282Metagenome / Metatranscriptome158N
F043947Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0208794_100070016F025388GAGGMTNIEVLQIALRRVGLNTTSSTFKDGARDYLNMVGRDIQSREQWNWLFTSSTFTTVADTQTYSLASDVLTPLSFRNVTENHVIIIKSTQDIDAADPDASIDGDPRWVAINGIDTNGAVQVSLYPTPDSADTIGYRYYREIPDFTEAEDNNSLDPYYPLVIQPALIHGITSLYKQEKGDDQGAAIDRNEMERVISVASRQNAAIQGNRKYRMRRSDDQAAGQFSYSPTEGSLS
Ga0208794_100070018F042282GAGMAKRMQQHTLSDEVAEAASSTTPVKEETASVTPDQIAQLILKGSDDTKEAIRKALDLDKTHTRQRRSKVTNSQVRNHVRAVGEVTHEPSFIPDPPSRITDRGPEAVRIWTDRWLENNGDNLSEYDLDQITAGAEM
Ga0208794_10007009F043947AGGAGMPYQHNLTITSRLRVAPSKEIGDGSTQTDVIESVVCIASCQQLDDDGNVIATASTDPWVSLDLSSLTAADFVALDALTGLPQRAIDQLTAWGQEQQSSLEAQLQARASAPREQTAPWSSA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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