Scaffold Ga0208794_1017793

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208794_1017793

Scaffold Ga0208794_1017793

Overview

Basic Information
Taxon OID	3300025093 Open in IMG/M
Scaffold ID	Ga0208794_1017793 Open in IMG/M
Source Dataset Name	Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1538
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Atlantic Ocean: Gulf of Mexico
Coordinates	Lat. (^o)	28.867	Long. (^o)	-90.467	Alt. (m)		Depth (m)	18
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014253	Metagenome / Metatranscriptome	264	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208794_10177932	F014253	N/A	MILVFKNNPEAIENTVYITPKEKRGAANVTLYGPTIQALGMELKSLTTDKTVMVNAKTLTVTDRFTTFVFDASSTAGDTKADLSGAQWPEGFIQYRIVERASSADVRAITAADVILETGLGYLTRGGQTGILLTESGNYLAQENGDLILAENATTTTEAYQETTYAEYPDDAETFTYYE

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