NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208011_1000016

Scaffold Ga0208011_1000016


Overview

Basic Information
Taxon OID3300025096 Open in IMG/M
Scaffold IDGa0208011_1000016 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)108230
Total Scaffold Genes100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)81 (81.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.405Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055656Metagenome138Y
F068135Metagenome125Y
F082712Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0208011_100001689F068135GGAGGMSLAVGSTIVTLMKYKVGDIVLVRSSAGEVIPKFHVKLVERIVSNPPKDPSYVIWRAHLTRQREADILRKEWQIPFKFPDQIETFVYQTNIIELIKTNG
Ga0208011_100001698F082712AGAAGMEKTSKKWQKVRIFNSYDDANEIRCTMLDNDDTGLLEVKIHRCGPDGSQFKVKKYFPEQKKGKKNDSSP
Ga0208011_100001699F055656AGGAGGMEIFGIILLMNLCIFGYFTYSFIQFRKNEKYRTQELNHKVQCLLDQAQRDYKAEREAELSEEPVTNVFREHVIDEISKQRLVYDETTGRYIRLRQIK
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