NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208011_1007318

Scaffold Ga0208011_1007318


Overview

Basic Information
Taxon OID3300025096 Open in IMG/M
Scaffold IDGa0208011_1007318 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3218
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.405Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008780Metagenome328Y
F008977Metagenome / Metatranscriptome325Y
F016981Metagenome / Metatranscriptome243Y

Sequences

Protein IDFamilyRBSSequence
Ga0208011_10073184F008977N/AMEHQDYNERIIKVLSFILNKLDTLEIEQSRHKEMFYKVRKNLTDANDLINQILDVISIENPELYNETISQYKNHNLKDMVSTLDKHILEFDEDQILELLTHIVGDA
Ga0208011_10073185F016981GAGGMNKKIDMAKFMKECMLTNDDKKQMRSLDDKTMKDDPNYPKNKRVNLEYYNEDELDDIAVDDYSDCDGREDVETLGDLGMDVY
Ga0208011_10073187F008780N/AMKKRHLVSLIRIIKDSLSAHKNADWSDRKVVEIVAENITNKFARYMKEQEGLEKLGKTEEDYMIPPGGLNR
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