NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208010_1080311

Scaffold Ga0208010_1080311


Overview

Basic Information
Taxon OID3300025097 Open in IMG/M
Scaffold IDGa0208010_1080311 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)688
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)160
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081222Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0208010_10803113F081222N/AMDTDLIQSLADLGGTLASLGFAGWLIVYLLKLQVHERTEWMQKDSDNDKALQDLIGKTNERSSKMEESVTLLTEVLRRFE

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