NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208669_1001081

Scaffold Ga0208669_1001081


Overview

Basic Information
Taxon OID3300025099 Open in IMG/M
Scaffold IDGa0208669_1001081 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10169
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (3.85%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.63Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026406Metagenome198N
F041491Metagenome160Y
F044200Metagenome155Y
F059454Metagenome134Y
F076604Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0208669_100108112F076604N/AMSEVSTCCGCSFEDSTIADCCTVEMYADTDICPACNEHADASGFICNECGNWFEDPEDKLEYDARMEENYLEEKGDARRKYGE
Ga0208669_10010812F026406N/AMKNSVVFEGGIDKVSTLADGSLRVYLGTPELSNETMVNLFGLIKKPGYVLISANHINQDQIDAVEKATTNAEFSEKTPSQRMRGVMYKLWEKTQPKTMNGDTGQMEYIEFDLFYKRQMNKIIDHFKTKLD
Ga0208669_100108124F059454N/AMKSYLLKKLIAGYKVNPRHSGLDLVALPYRYTNEKILVKHSDKKMIIDKDTPLLGEQTFPDKFGRNKTYTLYYYQWQPSKNQIKLEL
Ga0208669_100108125F041491N/AMSKTETTISFNVSKNINIGNFESVKINYGQSITIDPTKPLAIQREKLIEECYNVVKKETQIWQGLKAVQHVDSQKNTKTVKAKSSYSSFADQQKH
Ga0208669_10010817F044200N/AMSALPFNLNATTTKRAVGEKVEYITPGAHECKITGLTTSEQLEDYKGSPFIQYAVTSNGKVGRCRFWVVKETDKQSTQEWKTKQIKDFLVNAGVKDFSDDSKAMNDAIGNSLMVTFISEEYIGKNRDNEEPVIRTATKYRWSAKSGGKCTYNHDMNQTLTDEQMSEFSMKHSEWSKANNSISASAADDDDMPF
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