NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208669_1002850

Scaffold Ga0208669_1002850


Overview

Basic Information
Taxon OID3300025099 Open in IMG/M
Scaffold IDGa0208669_1002850 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5801
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (36.84%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.63Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025175Metagenome / Metatranscriptome203Y
F049293Metagenome / Metatranscriptome147Y
F070660Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0208669_100285014F025175N/AMAARKDKQGRRMTSGHYVKDAFFFMQDLQEALMMNDVKNFSQVDARYAQRLVEELDEMRPLIQNLANNLEANAPTILTDWNDF
Ga0208669_100285016F049293N/AMSPTREDLIELGYLKPGDAYASAPKRERKIFLTESDLEYADRHGLTRQEMKDFKEETMIEEDILNDHKLLAKKERVDNYNSPQSIHFAW
Ga0208669_100285017F070660N/AMIIKSFNFDTKERVGDCAPTYNRSWELDLTDDVYTLTVDGFSPEILEQTDRDIYYYLMRGMKKKLRVLESRGFKQWIYAQWQSGDVWGYAPYLSKLERDVLVYGNAQWTELDYFGD
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