NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208669_1028688

Scaffold Ga0208669_1028688


Overview

Basic Information
Taxon OID3300025099 Open in IMG/M
Scaffold IDGa0208669_1028688 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1373
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.63Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019561Metagenome229Y
F031295Metagenome183N
F098051Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0208669_10286881F031295N/AADVCXSCRRIVTRVSTRSKFRKVAVMVRAEEKLHGVISALTDEYNNYPHKRLKKSEVQDLVHDLEVVDAEFHDLKMPPITDDIQLDNKVCLFYIINELKDIITEPNVEDVEKRLTDFHNTLIFNLGINALHNHKNDWEDK
Ga0208669_10286883F019561GGAGGMTDKFSKPILRNLRTSLQDILKAECFGDKIPFEYTLGNCSFDEDQAKFQLIVTFKGNSVEDIAKKKQKEDLEHYAKYFDIDLERKHPRYTLVGYKIKSRKLPWIITDNQKSGEYIISDDQAQKLFGKQDVDTFLKGQREAQANG
Ga0208669_10286884F098051GGAGGMDKLRLSDLNDLRKWVDQMYWDFDRLSSSGQETLDKIADKLGMETNADVESRINKTIKDLEERNPTWTREKVYSEALRLG
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