NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208669_1083256

Scaffold Ga0208669_1083256


Overview

Basic Information
Taxon OID3300025099 Open in IMG/M
Scaffold IDGa0208669_1083256 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)685
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.63Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004103Metagenome453Y
F018618Metagenome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0208669_10832561F018618N/AMNELDLQTKIEGLKKAIAEHNDFAGNYESDLAKCEQELKDYNKPELTSSQLDDIQEAIERGVDEFDFSDTQNFDIEYGIEYDGKVHCESHDLNETYELIEKITEQVHKLFKEVLDTTEDDNHPVEKLQN
Ga0208669_10832562F004103N/AMKLIDQVKPEILTALENEAKINYSSSYRSIIASLSNTERYRQLSIDQVDQLITFLPDELHPNGRTDFYYGDYLLQKEYQV
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Institute for Fundamental Biomedical Research
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