NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208159_1000034

Scaffold Ga0208159_1000034


Overview

Basic Information
Taxon OID3300025101 Open in IMG/M
Scaffold IDGa0208159_1000034 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46418
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (75.41%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.198Long. (o)-77.499Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051160Metagenome / Metatranscriptome144Y
F051183Metagenome / Metatranscriptome144N
F077329Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0208159_100003434F051160AGGAGMAKVIAEKTQESVDSPKMVSIKHTRVMKNPNGNDVTVLDYEETRDVDSAIADAEVQKANLEASLAELEAELVEYKAIKDAE
Ga0208159_10000344F051183AGGAGMAITGTKVKTNTSNKNWFVNQCRIVEAEQIDSQYNDCSIRLKLEDKDNGYNYTTFINQNFEKDVNGIVTGMAFPEDLNTLYLASGKDINVSDVGEVNVDTLIDGEVAVINYAASGKYKRATWGVVSNPNDTDELEKKFMAQIAKGYPKNYQQPQETMVEEMLGNREPAQKTETVDDLPF
Ga0208159_100003461F077329AGGAGMIDRTMWFLYNRLGDNDRQAPSIDSISGMFFNYWKIMNVMDINTQTLSAIDIYNGLNTCYDKMAKSTAKNLYEYGEVPANADYRISYYEQEHEIYDTYACCTNLNEVLIEGGEPEFDDTEPFREALNEVAYENIEYEVESETFTLNDDAIEWYKTCHPGDDKLVTYMYDTGKNLDWEDIEEFLGDKLDMVDHQNADMHITQIRKFMLDRLANQNVNIIDGLEQTENGMKEVDPNTGELQD
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