NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208159_1000693

Scaffold Ga0208159_1000693


Overview

Basic Information
Taxon OID3300025101 Open in IMG/M
Scaffold IDGa0208159_1000693 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13230
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (96.15%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.198Long. (o)-77.499Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018178Metagenome / Metatranscriptome236Y
F039123Metagenome164N
F070064Metagenome / Metatranscriptome123Y
F082548Metagenome113Y
F088835Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0208159_10006931F039123GGAMDKNEFTAMYEQWFALHPFKKRDWPELGKVHYQAFSQESPALLQESLGMLTEEIDNFPSPKQIRAKLNQLSNSKTEGGEAKTNVTSHNETLATRLVEHLHGVEYGGKAVKRP
Ga0208159_100069310F082548GAGMRSPRAVAADMVKAMDAAMKQVWDAENKKESDEGLKRQVFAHVCNNYARRGGLLHGKTEITD
Ga0208159_100069312F088835AGGMMKEIDATEYIIANQLNYLSGRVVQLVTEYGVTKDIQVLEEACRDLATLVQRERFIEQRFENADHRD
Ga0208159_10006935F070064GGAGGMGRVKSELMIDGPDDELVPLPASQVLDNIRHCDLPTNSVERHEYLATQLKELMNGIKTNT
Ga0208159_10006938F018178GGAGMDRMDQILTRLSERINEWEGASREAIEAETNFKSFEAATQKAFMDGGASAAKAQTETRSTGEWADHYRAVQQASLMAEKLKKQIMLGQLMFDAERTKQANQRRIV
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