NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208159_1005225

Scaffold Ga0208159_1005225


Overview

Basic Information
Taxon OID3300025101 Open in IMG/M
Scaffold IDGa0208159_1005225 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3999
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.198Long. (o)-77.499Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003492Metagenome / Metatranscriptome483Y
F008424Metagenome / Metatranscriptome333Y
F015742Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0208159_100522510F003492N/AMAELLTDEIIIEKLNEDGIMEEPDAPWLLEYIYENYGGKLDTTSDYIDDNYTLKIYSESTYDSYDIYWCTHEQRPYVSQDGYYYEDYSDWSDRALDELTSGSDVWIENHIWDDMEYDFNHRLVEWWQDIYEDLFKEAKDELLDTGEYTIKENDE
Ga0208159_10052255F008424N/AMEKKINILERLLYLTIICGFCFFTGVFYTYYKIDQRLWNEDILKARDIETRYLNYPTKRNYKRDDLEKIIYGQ
Ga0208159_10052256F015742N/AMDSKKAYEQFKEEVVDRESAYLCTEIERALDRIITWTDPLDDTMFRDIKASAIKLLKEWH
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