NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208159_1005353

Scaffold Ga0208159_1005353


Overview

Basic Information
Taxon OID3300025101 Open in IMG/M
Scaffold IDGa0208159_1005353 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3942
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.198Long. (o)-77.499Alt. (m)Depth (m)38
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017047Metagenome / Metatranscriptome243Y
F031294Metagenome183N
F031661Metagenome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0208159_10053536F031661AGGAGMTNPNRKSFAVQLAEANNTFEARGLVLSRWDKSITRGDVNRFQKLCEFGGFWYSLGQILVQLRTESGGSRTDSALLKNASLHSVAKQRRSEAMKFFENFPVIVENDLLGKKSSICHMKDLLKEVDKIVNPKVEDEPFLEATIVADEPEVLAIEDKSSEAVPQSKKTAEDLALEVLLQVELNEVSLADFKIAMANAIGMIEQNNEVVPFKAVG
Ga0208159_10053537F031294GGAGMKFEMLDLFLVAMLMVGIFFGLAMLSLHGVGHMTWLSWTLLGSSAWCLVVGWGIVAYNLE
Ga0208159_10053539F017047GGAGMNTETDYKNELVQILWYLFKDVHGVRPRGMGYEKYSIADLEHEVARLQRSLEEEIRHEREMEDRAINACMDCGASDIATAMRWLEDAYDMEWV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.