NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208013_1000815

Scaffold Ga0208013_1000815


Overview

Basic Information
Taxon OID3300025103 Open in IMG/M
Scaffold IDGa0208013_1000815 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16028
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031053Metagenome183Y
F047026Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0208013_10008151F047026AGGMAIFLTQNGEPSEYGLAFNDNAYVIKTTNYTPTVRFKIMVLPETFPTDPAIATVRVYPTRAEDGGTVYFDRAFFDPSRFLQSNIKGEVDIKGAAHAGFFKTNKIHQEYYLLIQEEEKNSNDIYYVTNNWLFSKMKSVWNGVRDMDTWLDFNYDDYIINNSSSTTKRFLTDSPRTISIDSAQSYHLYFIANERFGAYQYNIKVYDGYDGSGSLIADATVSNGIATADSWSEIYQRIAIGTQDIINTDPSIWTDSLLGSTPSTALNGALSYTIHLEDNTNAQTSERFTFNINPPCSKYDGVRVHFLNRLGGYDAFNAYLKSINVTDIKKDSYDQQHHDWNGWSYDYSKKSKGSTDYNVGLRKRVTINTDYLTDSESVWMEDLASSPSLYIEENNELIAVNIDPKRIVRQTSLNEKL
Ga0208013_100081512F031053N/AMKQNKNHENYGLYITQNTYTMKFYCFSREVADNYWNGEPCKKASGATSQEALSNYKNGNYCNK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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