NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209721_1017131

Scaffold Ga0209721_1017131


Overview

Basic Information
Taxon OID3300025104 Open in IMG/M
Scaffold IDGa0209721_1017131 Open in IMG/M
Source Dataset NameHot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Tshipise hot spring metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1772
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameSouth Africa: Tshipise
CoordinatesLat. (o)-22.6092Long. (o)30.1749Alt. (m)Depth (m)2 to 3
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070754Metagenome / Metatranscriptome122Y
F090019Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209721_10171311F090019N/AKLDGLVSYLNRILGAARRIVRSVRVPDPMPPGNIIVGSDYFAAKIIMADGLTGLGANAETALQQFIADRYSKKLAQVYEGVRIPFTEQDYVSLAQQGFPGVRRLRWAINSDYAEVDYEILTTMQPQKTTFIL
Ga0209721_10171312F070754N/AMIVRDFSFDIIDSTTNTYKPFDPLTGTLILAPLDRYKIRVRDRYFVVIEPLQGNIDDPDPNAFVTAYSGGWGPGGTFSLNLLSQDFEQEGFAIHDEVFVFLHWATSTSAFHCTIIGLNGSSATFRTIDFTGSAPNIQAPLRAVIILLSDRSEIKPSFHFGNNSGPTSPLSAIPFTSPHADAIIAYTSTDPTDLPSPLTYNLQKYASMENSIVSYGNYLLGFSPLDFRRRAIIVEGTQFYAYRTNLDPQAQAQTTLYALDGRIEVLLQAPASVRDAALTFPCLLLHPNRKGRTLNFLNPGALNISGGIYTLNPPSGFSPTRYVLAVTGRDSDHPRLDIGDSLALTNPVMGATGTVPTIANRPGAEFVGVMIGQDGVEWVAVMTNKEPATTPTAGAFQVYYHQGPIYRYDSLMAELTGPDTPAGIYIIQTLLKVGNSFVPIDEIEYDTANIVTAPWPWSP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.