NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208793_1019152

Scaffold Ga0208793_1019152


Overview

Basic Information
Taxon OID3300025108 Open in IMG/M
Scaffold IDGa0208793_1019152 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2446
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050004Metagenome / Metatranscriptome146Y
F087024Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0208793_10191522F050004N/AMVLYLKMDQNVWAQRDFTDSATYDLSGTVYDDNTLTTVRNISAFTGTFRLIDQNGELIFSTQQNLTLNSDGTFLVKFGQGLSPVVQGTYQVRLRLEVSGTRLTCVGVNGSDQIYFEYD
Ga0208793_10191524F087024N/AAGEEPRGFFYDIMLEPNEGPEKTIYERFHFYVEAGLKTDPKTKTSIFSPEYLKKASQARSYEREYLGVWGKNVGDIFSPEGIELCCGTEYEWTVDDDTNDRVIGIDPGFGSSEFGICIMQKRKGKKSVIYADAFERASYIDIINKVRLLSDKFKTKRIFVDSAWPEGIRDLRDKYYMNVQGIAFNQYGEKMLNYAANNVDFEKVEIHPSFKKLKMQLMTIKFNKKGGTDKTKQNPFDLGDAFLLALYYYKMGSGTLAGVG
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