Scaffold Ga0208793_1081981

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208793_1081981

Scaffold Ga0208793_1081981

Overview

Basic Information
Taxon OID	3300025108 Open in IMG/M
Scaffold ID	Ga0208793_1081981 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	929
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)		Depth (m)	15
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F034211	Metagenome	175	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208793_10819811	F034211	N/A	MAYLKTDDLVIIPNKDGSNLQARVVDMQFRRFRRTWKDKATGENKSRWKSVPYAVCECFLGAPIGTEFVIPGYKLKNETKDGEKLLVLRDEYAAEFGGPWIEKMIEDSRAKRESAK
Ga0208793_10819812	F005547	GGAG	MKVWVMQGSYEGEMFSSVHLTQKGCALACILDITEFLGVEDEETALEVMNSCNAYRETDGEQTEAFEWDQNKLKEMTSQQLWKVFSEWSEISWDRMADRSFYLDANRVEIQG

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