Scaffold Ga0208793_1150321

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208793_1150321

Scaffold Ga0208793_1150321

Overview

Basic Information
Taxon OID	3300025108 Open in IMG/M
Scaffold ID	Ga0208793_1150321 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	616
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)		Depth (m)	15
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016661	Metagenome	245	Y
F095309	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208793_11503211	F016661	N/A	KRLIMNYNAERYLALKRYELEVKRDRIRALLWNVSIGSIYAMVVIQVFTGVIS
Ga0208793_11503212	F095309	AGG	MNYSEYRNKLRKLSAKYNESYKKCGWGADTTRKLRQQKIDLRAKYAIHSFDYAVETLTSKGIL

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