Scaffold Ga0208553_1010097

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0208553_1010097

Scaffold Ga0208553_1010097

Overview

Basic Information
Taxon OID	3300025109 Open in IMG/M
Scaffold ID	Ga0208553_1010097 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2637
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-11.499	Long. (^o)	-81.405	Alt. (m)		Depth (m)	210
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015401	Metagenome / Metatranscriptome	255	Y
F029244	Metagenome / Metatranscriptome	189	Y
F030887	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208553_10100971	F030887	N/A	MTNNDTNNKGYNTMINATHNVRVIKHIDGSYDTYANFTTVQNALHHMRRMNFASDSWYIIDANDNRLRLNDNDKLVVFNSLIGY
Ga0208553_10100972	F015401	GAG	MKTTETNILNVMYNNHRILIDKITEYDYNGDIAVVKKMCTVVRYAGSFLDGTDSATPMIFNVSPYESLTDMHDMAKVWIACGCPRDYDTVGVPSKWTKESLHAWVAG
Ga0208553_10100974	F029244	N/A	MKISNLEFTSEMLENVWKGHSVEMPKTDALRIVSNPKAAADFIANFGDVEIVLNTEYSPRWEVPAFKTERDEYCKLKQAHCERWGSE

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.