NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209349_1001986

Scaffold Ga0209349_1001986


Overview

Basic Information
Taxon OID3300025112 Open in IMG/M
Scaffold IDGa0209349_1001986 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9919
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009424Metagenome / Metatranscriptome318Y
F011408Metagenome / Metatranscriptome291Y
F013189Metagenome / Metatranscriptome273Y
F078828Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0209349_100198610F009424AGGAGGMAKLTKAQHTASGKIPANGLSSLENVSGETLASLALASHGPNQLPMGVVHKSISTDRGKFTFD
Ga0209349_10019863F078828AGGMSKKETQFNWSELCYKVDPELSAPVKQYVFDNGNKVFYKPKKRIKYGNRKSGR
Ga0209349_10019864F013189AGGAMEIERADVRTGLDHTTAKNVAEHLDKKYPGWLWAVHVMDGVVTVKSMLLSGNWGFVLHEDKIDNDYRAVTLAGGEILERYRQKTNGFNQERYMDLTMDYKGQLDGDFSPGTA
Ga0209349_10019866F011408N/AMDYYNPSDLNAEDLIKRVRIGHATEEFIRTPTGLTIAGRAISDYREGIEAFQKMAMQEWVGSSEEELQQYRKISNNLATPLKLLHWLDAIITDGDNAEAIAKYREAGDT
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