NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209349_1137597

Scaffold Ga0209349_1137597


Overview

Basic Information
Taxon OID3300025112 Open in IMG/M
Scaffold IDGa0209349_1137597 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)667
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000161Metagenome / Metatranscriptome1845Y
F005131Metagenome411Y
F022977Metagenome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0209349_11375971F005131N/AKNMKDIKKKLVKQVKRSRPSLAQEIKDMPMKDFRALWFVVQQGLKIKKKH
Ga0209349_11375972F000161N/AMKKFTIEVKNASQGQLLTIGTELKIMSNNWSKYGPRIRINGQELQAPSLHEPRHKPQAPSRKRHNMARFI
Ga0209349_11375973F022977N/AMKFIFEGRTYQFKNMEEANAELPLGDGAWFGPKDGNVDVPANTHRWVEGNFFD

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