NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209835_1001744

Scaffold Ga0209835_1001744


Overview

Basic Information
Taxon OID3300025115 Open in IMG/M
Scaffold IDGa0209835_1001744 Open in IMG/M
Source Dataset NameAnoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 52m metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11634
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Lake Kivu
CoordinatesLat. (o)-1.78Long. (o)29.2Alt. (m)Depth (m)52
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F002085Metagenome / Metatranscriptome595Y

Sequences

Protein IDFamilyRBSSequence
Ga0209835_10017443F002085GAGMNPISPVQNTNNIRYADFVRVTSPSGVYRFATTASPLTIPAVDSQPFTALGVLVKVGDAQRDIKSTANETTFSLVGIDTAMLGFVLGQQIKGSQIEAWKGFFDTDGNLITTGGAGGLYQFFNGYISTFSISEQWLEEARQFVGVISVAASSIQLILQNRVAGRYTNDNSWQFFAPGDTSMNRVAFITTINYPFGKDS
Ga0209835_10017444F000934GAGGMSLNQILSISESVGINDQRFVGQMVSRNQRISTSEIITVVPFAFDMRPMNYLLYSQSRSLLNSLRIPDKSLEQYLNFGSTGWLSYIKYQGSMTSVQITSCQWQTSSAAKNLVLGSLPSISPTAYIVRAGDFCQVGRYAYIATEDVLRGSGSTVTIPVHRNLIGTLASTVAAVIGQYGTTISMGGTSYTGVTFPVILREYPTYTLIPMTNDSFIQWGGSFKAFESVL
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