NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1000018

Scaffold Ga0209535_1000018


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1000018 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)105613
Total Scaffold Genes126 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (19.84%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047973Metagenome / Metatranscriptome149Y
F052252Metagenome / Metatranscriptome143Y
F083374Metagenome / Metatranscriptome113Y
F098204Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_1000018122F047973N/AMSKYNAIREQLRVEVDKKQQGTVDTVLRDIELRHSQDDFCEQYVKLQDVGFSPYDCLIAYMKGIK
Ga0209535_100001875F052252N/AMQDQFINPQQIRSPYTGETVRPTYNTYDANGKTYEQAVMSDPVTGHIIKKGLVSIKDTKTGEVIQDYHSALSQSNTTQSRG
Ga0209535_100001878F083374N/AMSLYQKRFSKFLREQDDENTDELTDQEAMASTLDPDTSIDEFDVDVPEGDSPISSQSKQMFEELNSWIQKMDEFSDYLNGTSDSIQTSLNSAEGDTIFDSISNAETKKIARVAMEVSSLSEILKGYLAGANDPKYKFN
Ga0209535_100001882F098204AGGAMYMSQNVDIIEEYGIDFVARFACLYEGVNTACDRAERLGYDTQTSNVWCKPTALQKYVSERYLDMKHEIQLHQKGINTDEIYPWSKV
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Institute for Fundamental Biomedical Research
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