NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1000205

Scaffold Ga0209535_1000205


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1000205 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40057
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (78.12%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032679Metagenome / Metatranscriptome179N
F068729Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100020529F032679AGGAMASLKGLLTTRNPAEMIENNLETGYIYSYTSGTNYTKFCNGICWTANVDGVATIEVWGAGGSGSRMCCCGDGLPGNAGAYVQKKITVQAGDTMTGQTGHSCYAHPLCHSGCSEQSDVCWVTAANGNGCICSRGGYGGKSMCTTGSSLFCCFRAQGFCYTKCNNDNCGTICNVCEGHWCSLGYGGDTGKNCCGQFSCASFFGCCPHCKCRFQQHVATPAGLFSEQGSLITFQKESDGTPMSQWSGNQLFQWYAALNLATKTPRQGNPDAHCWRSTRSCGCYEMQGCNNYLPVGAGGLSPNPCPDVRDHGIRGGFGGVRIKFVPSS
Ga0209535_100020531F068729N/AMEGLRDQLNKFPFEMEIPDEPYLDNFSQNKSQTAYYVGDRYLKFAVNEATGLIGECLWRAPTLELLEKRICHTEPGHYVITLDAKENPWEASYMTNTYQHEPVPNYEENVGQLDSEGNPILWDYSWGHVINQIYYINDLKYIDGKFVKPAFRFHQHTNETVWKTVADHIEMCTKELERLVYQPEEKTAIEDCKAGWIDIRDNFQHVHHWKLKYPDMPLIKP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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