NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1000245

Scaffold Ga0209535_1000245


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1000245 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37104
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017335Metagenome / Metatranscriptome241Y
F022460Metagenome / Metatranscriptome214Y
F063836Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100024512F022460AGGAGMATVKNNRTGFPSLYRATYEEGWELKNTGYDYSKTLLNKTLSNYMFRNRHLKTFLEDYLNPIMVFYVNKVKYLRIYYNFAVPKWYQKIN
Ga0209535_10002452F017335N/AMNIKSLTLKNKLSDEKTGQQYFDLTAPSFKYKRELGVKALHYVQQDQIGRIDKISQMYYGTDAYLDAICVVNNIFNPFTIQEGDVLAIPKLEQLDLVYKRPNPAERPSASLAQYVDTGRQSEKDQSRIQRLIQKAKTKKNGVKSPIPPNMLQQGQDAKVYEGGKIKLGANLPTRNSTNTE
Ga0209535_100024529F063836N/AMNLKNYNNFVNEEIDDFYKDLENSNKRLKLFATFDKSELKEVKTSFSIPAPKKKFQPKVKGFKKINKDKGIF
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