NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1000441

Scaffold Ga0209535_1000441


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1000441 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29087
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (91.49%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091009Metagenome108Y
F101878Metagenome102N
F103923Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100044115F103923AGGAGGMAEETIEQMNRLLGGTGAVSDMEIDQYRKSLMGGGGGGAVSDMEMQGMAPPMRPQGMGAVSQAEIDMITSAQQGLMQMDPEGTKDIVQGMETTKARVAQGKGLTEPEFMGIRSILEKIGNAFSGMMDGGDTMTYMVDGNPVEMTERERMSAINAGMLVQDMGTYQVDDRMEKMTPDTYAARVASGEITPDELMMESSGSTMTEAEKAIRDNAEFNRMVQEEQERMFNMNNPPVTSSVRPRLRPTQ
Ga0209535_100044124F091009AGGAMTHSVKWLTSKEASIGRLARLTKDQDYPMITHQYVVHVELNGNMAKLDRFKEIDADSITHAYTLAEQWVTVHGATSVGIRKVERDGDVGAPDIYDWCDFQEFDLYEEEAV
Ga0209535_100044125F101878AGGAMLLRMTTIDFNTANIIVDFGDDCYAVQHENGNVGIYAKDEDDLLQISDRLIRNPNKTGEEIAKDMWGK
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