 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025120 Open in IMG/M |
| Scaffold ID | Ga0209535_1000528 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-28 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 27343 |
| Total Scaffold Genes | 50 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (12.00%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 48.9699 | Long. (o) | -130.6666 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025968 | Metagenome / Metatranscriptome | 199 | Y |
| F026885 | Metagenome / Metatranscriptome | 196 | N |
| F033811 | Metagenome / Metatranscriptome | 176 | N |
| F053982 | Metagenome | 140 | N |
| F054452 | Metagenome / Metatranscriptome | 140 | N |
| F061389 | Metagenome / Metatranscriptome | 132 | Y |
| F066285 | Metagenome / Metatranscriptome | 127 | N |
| F079390 | Metagenome / Metatranscriptome | 116 | N |
| F088643 | Metagenome | 109 | N |
| F103078 | Metagenome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209535_100052821 | F025968 | N/A | MIAPKEHVERVLERCFEVYPPKGRKHRKFFKNLVKQGGMPESMASMITKIIENPNCVYIVKADGTLKILKDKNEDIKFV |
| Ga0209535_100052826 | F053982 | AGGA | MVKKDKMKRKQRMHYYGILATYNPYDDTWYAFHNEDLSKYLSERDSMDLGKGEDALSAMNDYLSKKITSAFS |
| Ga0209535_100052829 | F079390 | N/A | MDKPKNFKELKKRLLPFINYEQEVQLSKEAKVQNVGNMINSHVKILEANTGNAAYMPYYDRLVMLLTILETGWE |
| Ga0209535_100052832 | F054452 | N/A | MTDELKMSLLNELMFGLDVCNHEHHEEIMFLHDFGFVKVYDEDLQFTATTEEGVLELKRLIKLYFVFLN |
| Ga0209535_100052834 | F066285 | N/A | MDKKLWNVVYFNRPDVHKTLVWSDGKRYFDGFLGSDNSVYRKTSGTPVEEPNAVYWTEKPFNASDDQE |
| Ga0209535_100052835 | F061389 | N/A | MTPGTIFILKTHEEREDIEIFLCEDPDEEGKEFWLSRGFVLGEFESDYKPKCWTEDLFLI |
| Ga0209535_100052836 | F033811 | GGAG | MKLFCNIAVMETNIAQAFIEAIDYSHVKHIIRSNKSIKAYWGGVTPSIADLKRVIKNMWARVSKHESAEDCVNGIVMIKDGKKVRIDFLYLSYSSQMEESSQHSEEGCSQDSEREIKSS |
| Ga0209535_100052845 | F103078 | N/A | MEREIAVIKPKGVNHIKQAVTLTATYSLKGRNISLNQYGEVKPGNLTTNRGDIRFAGELATESKIFGDSVDEVEDQIDFWMNHPMVEDINGKGKDNSRFTIEVIAATKDKKRAKTVSVNRVVSTIYGMSEAERKDVMYFFKQDPRDMNDDDVTLELVDIEGGLLLREPNTSRFIETFGSLNKSSVAKKVEMLVYVNKGIVSGFVTEDAEKFYIGDVLIGKDEDDIALFFKDNPQMYDNLVRSLADGGDDTAFNELNEAEDDDITPAEKRAHFTKLYKKYKLKGKFPADLDKAIERIHAYEEENGIELSE |
| Ga0209535_100052849 | F026885 | N/A | MIEVGKYSIVSLQEAVESAKEMLRIQDTTEFDGFLLRKADEAMRHIGDATTYAKRACTVDIVDGRARLPMGFIRLLGARMSDSNGNCFDQPYLDLAFLTDCGCENVASTNNGFNNSFEIQEGYIVFHVPSDLETDKMRIAYISRTVDEDGLMLMSERHERGIEAYLCYQFTVSFFENYPVNIRQEYQRTWKNQKQHLKGMSQRERFEENKRQIGALLNAWITSDRNDR |
| Ga0209535_10005285 | F088643 | N/A | MKKEDKKAVIDILAKWRDMIGVDSRIVEKLIYEVNQIYIPEPIDISKSDVIKADMVNMCNQIKYDRKKNNVRGLENTTKRMAIYKASEIKYGRTSTLERVAKEFFEKDRCTVIHWRKKSNDFIDVKDPMFVRYVNELI |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |