NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1000944

Scaffold Ga0209535_1000944


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1000944 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20148
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (29.17%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005194Metagenome / Metatranscriptome409N
F009788Metagenome / Metatranscriptome313Y
F087884Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100094418F009788N/AMDIIEQDATNYIYCNISNEVVNAYYTMSIQSAEYEVNATLAAPVGVNNRYVKFTLIEGTQDLSNATIELPNKGDYPYKIINATTLGGTEGIEIHRGILRLKQPKEIVYSFTDEQNTYIYE
Ga0209535_100094421F005194AGGAMEGIKSEHPQINTILKGNIWDVDLTKDVTGSYLIYDVSNISPNGFNGIDYSLDLFLCDNVTEINTESNEVSVQNECCLIALDIMSIFENYKKASYADKDLALVLNKSWSIQPFTERFDSLYSGAAITMSLSSAYGYARCKIPT
Ga0209535_10009447F087884N/AMDNTQSFKISVRQYQEINGIDESLSLVEQNIYAVAAIKDITYEEASKIKMSEFKKIVDQLNDFNVRLLEKLRIRNKIFLNGTEYHIEHKPDKLTSGQLLDVINVRSKNQGEAVKVMHLLLAAMCRPRGKEYGDDNINLEERAKLIQEVDLPDVWNVFVFFWNLWNDYLSDSEDSLSKWMRETLEMTKEILDNDGDSLA
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