NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1001124

Scaffold Ga0209535_1001124


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1001124 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18385
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (68.42%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011192Metagenome / Metatranscriptome294Y
F032266Metagenome180Y
F077948Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100112412F077948AGGMKDYAQQFNKPRQPKPWNDVAREMTENLIFVALMVFIIIIIAKAVI
Ga0209535_100112414F011192AGGAGMQIKYSSIELSDNEFIKFQDDFYNLLEKYGVASIDIEHPEFKEICKLRNKIAEFIEQEKAII
Ga0209535_100112424F032266GAGMNDTVKAVIFIKDAINLSQDELKEKFKEAVDNNEINHFEIKSKGKGIEK

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