NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1001219

Scaffold Ga0209535_1001219


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1001219 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17672
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (48.39%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003770Metagenome469Y
F008783Metagenome / Metatranscriptome328Y
F015534Metagenome254Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100121912F015534N/AMINWIFWAIPPQHVKRYFVMLWLVLFFLPGMVLGVRLTIMGLLVNYLWFDIVFYGWIKFKEKLEGE
Ga0209535_100121921F003770N/AMCAVTMMECTTHYEEPPRTFNTEEECQEALVIKQEETIKMLSDEDGELIVIHLELGCTNVYN
Ga0209535_100121922F008783AGGAMATVQPRHERNDPNAGMQGAYYTVDIAMSGFLDTESINGGRLSPCAANDFATKPTTLAQSLLVSRGQLRYKMMLNNLQIRSNCRIINMVTTYAATEGDSPITDINFGIVFENDDFIPTTGTQSDDSTTTSTKVAYIKDKIGEALYGSHSENMSVFNPTSGSGLIQNTEVSVGPVLLVSQDEILDAITVAEVAGFRSNVDAETPTDNALTYSAE
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