NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1001237

Scaffold Ga0209535_1001237


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1001237 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17551
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (29.03%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006848Metagenome / Metatranscriptome363N
F007366Metagenome352N
F011489Metagenome290N
F013089Metagenome274N
F022880Metagenome212N
F067697Metagenome125N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100123710F011489AGAAGGMNSGSRKGWNSFLTKHYLKLVRIARRWTDSPSDLVHHTYLRCLDKRFPDGDSENPLGYFVKAMYTEATRGKFKDLYHVTDADPKEQAFESDWTKAIQREQMQLILDRLSWFDRTIFSLYLQGWNMADVSRRSRIGESTLYRSLHITRKILKDVLRNGTKED
Ga0209535_100123712F067697GAGGMKQGYYGNFFERLKIQEFRDCIIKHEAERAPLLEQQHKTVSRGAEDPHNVKPYDPEQARLEWRMKNNPFLIPGKNDSVKGES
Ga0209535_100123716F013089N/AMGQSKIKTIQPNGTYDSQNGMMYKFEIELESGDSGEVSAKSEDRWSIGDEVEFEVTPSKWGDKMKLMKPGFTPNQSRGSNPDIQKRIDASWAIGHAINQESDPEKVLEAAEFLLSIRATLISKL
Ga0209535_10012372F006848N/AMMELKLPHRWSDLSLGELQVMMTADNPLEKISICSGYSVEKLRAMPQKLIEAASAHLDNLLTQETARHEKVVEMDGKRFGFIPSWDEFTAGEWIDMENHLEDFWANAHKITALLYREVTYELGDKYEIKKYTAKEDASIFEEMPADLVSGMLLFFWTSRNQLLHDMQFSLLEVADKAIQSAKNGDGITSSIPSQEKTFSKWTRLQNSLFKSSSNTSAI
Ga0209535_100123720F007366N/AMRGTPLKETKLGKWFKTKAPKVFDLIGEIVPGADALKAIGALIDNTDTSDEEKTKAKLLMEEIASADRANARNREIEITKTLGQRDWMQVFVGSAAMIIGIVMVVWAKTGVQDKEIFFHILGFAEGTLVGQVVNYYFGAAKK
Ga0209535_10012379F022880N/AMFFVTAQKRTDRLYICKGCEHFVDKTKSCGDLVTEAFTDSELCGCHMPTKTRLKVASCPLGKWEAEIKQADLEAIKTFLKTENQFRTNGQLAQLYSKVTGTNTQASQCSSCNRRMLAELQKLVNETE

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