NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1001435

Scaffold Ga0209535_1001435


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1001435 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16247
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (68.97%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028310Metagenome192Y
F066804Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100143510F028310GGAGMAEKSLNDIYRDIENEVEDECFDREDIRLKDQDPYAIVGKSHSGDILLKVGDELGYDVTKSLTFPEALKLIKDLTNAIINRYVK
Ga0209535_10014354F066804N/AMPISYLEFKLNKEIAYEDTFENDKKIREQYDEYIKQTKREEEKMLEKDIYFNVYVNNSENPKAPTHSWNGFTVKEDIVIKAGTKVDVVFWGNSQRDGNPNPHMKISNHVPRENKGGAQINDINYPTKAQVQADNFLDDEMPE
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Institute for Fundamental Biomedical Research
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