NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1001584

Scaffold Ga0209535_1001584


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1001584 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15426
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (90.32%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015346Metagenome / Metatranscriptome255Y
F022555Metagenome214Y
F026042Metagenome199Y
F048646Metagenome148Y
F063682Metagenome129N
F105878Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100158417F026042AGGCGGVTYNVLRLLEQEGYIKEGEDNLIHAEKAFFAARVMGWIKNKAATEKDFDLSPYLKMLTYYKLDLADLKFSEDEDTILYQMKKNDKEVQELVDSLIESARKPVSKTEEPDPDT
Ga0209535_100158424F022555AGAAGVSIAPKFKPGQLVKYDHPANPLLGLVMSTQFSRRRGDPVFVLVQWCGKFRNEEEYIPQAELKLVEDV
Ga0209535_100158428F015346GAGMEHRLYNVGELVAVASNRVLGIITRSNYWALDEYLGGELEFVDVMFGSSISKQYPVRYLVEA
Ga0209535_100158429F063682AGCAGMKPGDLVRIRKTSIDHMSANWFIWHAEHKTPLVLIEELNKSYWNVLKPDGETVFIHKSHLTKRMY
Ga0209535_10015843F048646GGAGGVLKVSEVYEKQIKKIKERPDGSEFVNFGKVYDTRETLINTHYVVSVHPHEFASDIEREKFEDSFPEGTKFCTFVVDGNSFRRSEITVVGSFGKFCRILEDNSQ
Ga0209535_100158430F105878GGAMKVGQIIKLTPQGLNNFAPGIRKKIDGELGLVIQEKYDLSHKLDQDKLPERVKVYPALVRFESLQSMNFLETGSVMVFPDQAEIIS
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