NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1001691

Scaffold Ga0209535_1001691


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1001691 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14791
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (56.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000464Metagenome / Metatranscriptome1105Y
F005720Metagenome / Metatranscriptome392Y
F016994Metagenome / Metatranscriptome243N
F020386Metagenome / Metatranscriptome224Y
F022908Metagenome / Metatranscriptome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100169110F016994AGGAGGMATETNTTFTAASTSLLGKELEFITIDAGEELANHLLKNETANTIENTVRVYGNIVGAGPLFDSDASRTYIVEGTDMFVGAPASAGGAFTFTESGADGSSVGTLLAALKALGTVDGINLNDSGTTAKIENLEI
Ga0209535_100169120F000464N/AMLRTYSHHDRDIDDFDEEFWPMMGILFIIWGAWTGVVHLIDWLTVDAIAWYVEPFTIIPVLFLIVMKEKFDSLNPLHWWPMFWGYNAKLPDEDRITIRPLDTERIMKQHGGPLNVHIVDYEYIRFRKKKDAVIYGLTNF
Ga0209535_10016916F022908N/AMPTHLDEAIKIIVGPESQLRDKTPRIYQFPKAEHMPKGFTNLKRMRYLDHDVSAGRNIKRWLWRDYSPEIILQEPPFDKYEDQSEIFTLIRKPDDRWWSGIKDMFYFMPWYTWWTNEQVMKQWPHFTRGTLRLHDVMEQVKPQHLIKCDNGLNDRIIKFAKTHSLLCYGNVPYEKALRHTKPDIKKLEDTGVRELKAWLRKNPDRQKQLDEYLESDWQYWEKVEYQD
Ga0209535_10016918F005720AGGAGMPATSNNNGNMSRRQAFNGKGLTFVEMMFDVDMASTATTPEAKDSSFDVCSKILEQHGTLLAKSYALGVKATERDAADGNSITEDETVDTYQFILEGTPGQLKAVDSAGGIHLDPNQADATDPGVIADAEADIETDILARIDDNDSAGGVHVTVRYLPADGVTSAGAEIVYGMTNARVSA
Ga0209535_10016919F020386AGGAGGMAITRNNFSSLATASEQEGVDVSFLTVDFINSMAAEIGDPQADSTAAGLALVRHAIENLGFNIIGNGALGVSNTEVTYMVRTDSVDKDTLATGSSDVIRDAVRAVDTNGRAASATPRNTANFSAATVTVQALGMTDTGVNA
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