NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1001841

Scaffold Ga0209535_1001841


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1001841 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14090
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002190Metagenome / Metatranscriptome585Y
F008783Metagenome / Metatranscriptome328Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10018412F002190N/AMSNKLCYYICLVTKNGKTEEYGYGLPYKDVIEAVEEHYTNGADAVVMEMITEEQFNDRLPKPY
Ga0209535_100184120F008783AGGAMATVQARHERNDPNAGMQGAYYTVDIAQSDFLDTETINGGRLSPCAANDFATKPTTKAQSLLVSRGQLRYKLMLNNLQIRSNCRIINMVTTYAATAGDSPITDINFGIVFENDDFVPTTGTSADGSTSLSSKITYIKDKIAEALYASHTEKMSVYNPTSGTGQIADEEVSVGPVLLVSQDEIVDAITVAEVSGFRSNVDAETPTDNALTYTAE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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