NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1002155

Scaffold Ga0209535_1002155


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1002155 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12889
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (23.53%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017335Metagenome / Metatranscriptome241Y
F018962Metagenome / Metatranscriptome232Y
F056630Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100215510F017335N/AMDIKSLTLKNKVTIEETGEQYYDLTAPSFTYLTNQGVKALHYVMQDQAGRIDKISEIYFGTGEYIDAICIVNNLFNPFSVNEGDILVIPNLDQLNLLYRRPNPASRPNAVLAQYVNTDIQSEMDQSRVQRLIQKAKTKKDGVKTPIPPNMLQQGQEAKIFEGGKILLGANLNTR
Ga0209535_10021554F056630N/AMQKDNTKETSEEQTSEVKHWQWIKGDQSGSVVTIKDEDANWITFNEGGRLATEFRSEFLQELDSSIAGEFINTPNSIVDPLNQSATPPQTVAKVADDVLIPTKQISPIRVLFNKQKKNNKVKLLLEFPVNIPSKDLYELMSTSFDKEEVNEQLQSFILDQLSEDEILDCLHNSVQSLIESKYKGE
Ga0209535_10021556F018962N/AMIKIVLEPARNGVIKKVIDDNHGGGREHFTSTDVYESIEGDKNKLSYVKRFFFDLCDDLGLDVGSKFDSQVLDVKTDWGTHYEPTEKDIDKKIKKLKSELEELEEWKNI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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