NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209535_1002684

Scaffold Ga0209535_1002684


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1002684 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11584
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (13.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016691Metagenome / Metatranscriptome245Y
F067912Metagenome / Metatranscriptome125Y
F079339Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100268411F079339N/AMSYLDYRRKVYDEVVSKIDKGMDVKSLRKHLVKEINHLEYLKSYE
Ga0209535_10026846F016691N/AMKVGSFVECIDDKFSSEQLTKLNKTPKEGDYYTIRDIVEYPEYNRVGVRLEEISNPSIDKGGSPHEPSFGIFRFRELEIPPPMELKIREILDNDLELVETEDDGILRKISN
Ga0209535_10026847F067912N/AMTEYLEKFLIKMITHYVPDGIDPVLHVNCRAHMFEIISKLIKEEKIPPKLAIIKYLCMNYKETLYSKLSTLN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.