NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209535_1002909

Scaffold Ga0209535_1002909


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1002909 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11115
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004370Metagenome / Metatranscriptome441Y
F012239Metagenome282Y
F052947Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100290910F012239GAGMLVDNRFELEIPTHIAFTLYKNDYIDNLIISKVKKECRNESKKKNEFIVSLEEFQHAIQTSAFLRAELKKTLDQDLLPNPNFKPNSIFFLQSIINRLANLNKITFKISDEKIFSRLVKVDGGREIVSFHFNIIEGTFDLTQILDRVQLDTFNKRFMDVGIMKNKYLERTPYFYIKATVLFDILSEMDEAQVFDAFDIITSVDPKIEEDDPILLVKTDYTPY
Ga0209535_10029093F004370N/AMYKVRKINFGWYKRRYGILLENLPPLKQKLLLNNRHMKWLESDTQAFEVIFKVEDMNGHEKNVNKAIWNPFRETFTTLKELEKDADLIDWNCGICKVPIKSRMDSKKVENFVCSKCSKAHNSRNKSVDGRIIDISIKFNKHCKHLLKKEQREFMSYAKRSSKT
Ga0209535_10029096F052947N/AMRAPFLEKLVKKYPNHYQLGAAVKRYYDLRQTKLTKEECEEIVLNSTFSFN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.