NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1005816

Scaffold Ga0209535_1005816


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1005816 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7509
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (84.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021206Metagenome220Y
F049285Metagenome147N
F065691Metagenome127Y
F067202Metagenome126Y
F070649Metagenome123N
F089518Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100581614F049285AGGAGMKLIKVRVNQTVEYEVSVPVQDEHNYEQVKDYLQSIDWEDEIEVSPQNYKHIAEYYDWLDWEEENV
Ga0209535_100581616F067202AGGAGGMQFKDVIIGAEDMERQTVDTVAEAISEHIIELGLATPETLTGFTWRLDVRMRVDNETV
Ga0209535_100581617F021206N/AMTVTLNQILAMENVLATRKIPSDIEAMAKAKRYSESKQDWIVLGDQPLHYVLRILAKEGLGDAV
Ga0209535_10058163F070649AGGMQPKDKPSHIRIQYEPTQKQKKKECRLYGKEFINMAEAARYWNISYAWATEQVNKGWNRDRFPPKARKDYT
Ga0209535_10058167F065691N/AVARRKRIEDIPLNIYIPEPITILLIVLSFLAGFLYKKYNDKEDIADAFDEGFEKGTKDVVRALSDITGRDIQIELEREDLDR
Ga0209535_10058169F089518AGGMEYVIRIKGKGGKCFAYHSTKDKSELDRLVKKYLAIKGITFEIHRRYLA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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