NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1006088

Scaffold Ga0209535_1006088


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1006088 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7304
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (52.94%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000413Metagenome / Metatranscriptome1169Y
F000983Metagenome / Metatranscriptome814Y
F004488Metagenome / Metatranscriptome436Y
F087882Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10060881F087882AGGAGMKMTKKKAAISVAIIVALVAIWSVMKPAPAEAAEMKVYGSLNYMLSNNENASGVA
Ga0209535_100608816F004488GGAGGMFTRLRGWFRAYKNSLFESYEPPKPTVYKLGKKKYVKVKRLRTTSKSKGPYLK
Ga0209535_10060884F000983N/ALDCNNQQKIADSLYGYYVGLTANRPPSEFWNNLSREEIQDYLSIPNNPCRQWFDELGLRVRDMSFTIYNEEIITHIHKDEPPVIAKINFPVLNTRDTYNVWFDDYAREIDRVECDRPIVLRSDILHTVEIGKSATYPRLQFSFCFYNEPLQLLK
Ga0209535_10060888F000413N/AVKKFYSIKIKQFKENIPPALAETLLLDESKLVKYLWKHKALEFRYPKNKGRLDLYADEKYLIMGKLKHPNMFGDKTRMGFMELYMVHRINQRMNLARGST
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