NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1006166

Scaffold Ga0209535_1006166


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1006166 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7250
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (13.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009889Metagenome / Metatranscriptome311Y
F036974Metagenome169N
F037984Metagenome167Y
F042076Metagenome159N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10061663F036974N/AMNDPFKLQFWDNFNDSLYFDYLLKREEMLNTYRITYKQYAGSDTSAPVSYAIKYLKAYNKHDAINAFNLWKGLIIKVEICD
Ga0209535_10061664F042076N/AMKGEIEIFKNEDDIVEFRIHDTSFRVCIETETYWQEEAVSFNGFTDEIQYEEHEETTTFVRMDTLECTGTLYYSKQDICSELERMLNEHN
Ga0209535_10061665F037984N/AMKRTETLELLIEIQEAIEHFEKRIDEAEWSNGFGIGLEYPNIRKKNTHNIIIYGMCIGRLNERFTKQLNTLK
Ga0209535_10061667F009889AGCAGMRIYSLICVLTLFSCSSNYHYRKALKKGLKPIISSDTIRIATIDSIPIVRHDTLVYEKYFSSKDTIVHYENVFVPKTRLETRIEYKIHRDTIRQVTRIEVQKAKASKQPNYLLWVFLIVLVLAALQLFKKFI
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