NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1008110

Scaffold Ga0209535_1008110


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1008110 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6148
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F004988Metagenome / Metatranscriptome416Y
F046006Metagenome152N
F090883Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100811012F000720GAGGMTLQDDKIMRYEIPNRMMSTTFTLPIDNRKVIGIVNYTAGADGITPLALWVKIKPTDSYIDRELRASGKLISRCLQHGEDLKELAETLSQDNIIGQMVHYFQKNVEEIISGNQPDKKQRMLSTDPYASQMKE
Ga0209535_100811013F046006GGAGGVKEFLTPLGKYTNFVLLLLILHFCITVMVVNFRYIDKLNNTIDTMWHEIEQVKDTNIKLWQFIEEHGDDITGR
Ga0209535_100811014F090883GGAGGMVTTALTMRRINNCRDMLTKTTCPRMRLMWKRNYEKLLKKYWEEQGERILNAAGQVH
Ga0209535_100811015F004988N/AMENENLVRTICPRCDGNGYIRITPVIAGVFDRSSEIDCPMCEEEFTHMGMKVTAHNGYVLLPKEQTRTNIEGGRESKTKWSGETLPEVGK

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