NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1009018

Scaffold Ga0209535_1009018


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1009018 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5772
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016322Metagenome248N
F017401Metagenome241Y
F046635Metagenome151N
F056910Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100901810F017401GGAMKAKKESKSMSYQYTAVDMVPPHGATQINKDNQLCKKLGTLARTDAYVPQCVAPKSSNFLTIFLEFIAVLAIMIGSIIAAWCLAVIL
Ga0209535_100901811F016322GGCGGMIRDTNHPLFDEVAYAHVHARAQVLSDEVNKVGWEEIIDSSAMAIRAMMLRMNTKRLRNDTFYAGVIDGQLGVIVRKGEKH
Ga0209535_10090184F046635GAGGMITCPECNGDKYITITLYHRQSFSRDIGYEEERQEACPTCQGEGQIEGDTDDQE
Ga0209535_10090188F056910GAGGMPTKIKPNAMKKADAADFCGISVSQFGKMIKLGTMPTARNAGGAKIWLRTELEDALTALALDGERDEGCADQAFGLNT
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