Basic Information | |
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Taxon OID | 3300025120 Open in IMG/M |
Scaffold ID | Ga0209535_1012384 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-28 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4700 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 48.9699 | Long. (o) | -130.6666 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000379 | Metagenome / Metatranscriptome | 1211 | Y |
F041446 | Metagenome | 160 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209535_10123842 | F000379 | GGAG | MKIDYENKHGMMVGYIDGSQNVSAVQTGWDIKPEALSKLLLDKYPTKEDAITVVDSPLLVPVFKKDDYCYVDEFGDVIESNLSWHKEVMRKDVGHLFLFMKGTWQYSDNGIDWEPAKEAFVDTSGVAIESIREVLEMEKA |
Ga0209535_10123847 | F041446 | GGA | MNIRVIKLQVIEDEVINEYELVDAITDPTEGSLEIIVDEGPDLSVIKLFGRSFPESLHMLADNLGIDKKIIKITTYNLVQDCSVWPNMEIKHPVEYFTAAGRFEVPLDKKIQKHFGLFVGTSRWHRLYLAGMMHGLYKDKTMMSFWQHHLNNSSPANLRMDDVMLKDANGSVREHMINFVKQLPLHLDPGDIKLNLNTGADITRGDWETPYEILPYYNSIFMDIVCETWHEGQCFLPNEKTGRPIIARTPFMAYAGRDFLKNMRKAGFQTFDRWWSEEYDKHEGVQRIQHMLKEIKKISGYSIDRLQEMHQEMNPVLEHNYKLIKLLTPNTLREKFQ |
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