Basic Information | |
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Taxon OID | 3300025120 Open in IMG/M |
Scaffold ID | Ga0209535_1014827 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-28 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4172 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 48.9699 | Long. (o) | -130.6666 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F015153 | Metagenome / Metatranscriptome | 257 | Y |
F033251 | Metagenome | 178 | N |
F064114 | Metagenome | 129 | N |
F067196 | Metagenome | 126 | N |
F082525 | Metagenome | 113 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209535_10148272 | F064114 | N/A | MTVLEQWKELAKVENLRHQLVAQPTQAIVGRNYGAKVDLMAVAFDAVKTRDAWTIKDLARKMQIKDEAAQQLLRSLVKEGHLTSRPMHGEPVYEWPDRNPSKPLPRLGSRYR |
Ga0209535_10148274 | F067196 | AGGA | MPKFNKIEEKHKFFHNAMRKLDTGLPEEASPDLIKFFVLHVITAYEQEDCWDDIKGFVDFALKGMSEFDSARQAVEDADNLLEAIKNSKDK |
Ga0209535_10148275 | F033251 | AGAAGG | MANKRKSSKDFPVDRTFSMWTAKEIDQLLEYKATGFKHSEIGEFMGRSTKSVNVKLSRIRNSVNAANNPVDNLTPFQKDLDETLFGGVSPDDKPKKARGPYKPRATKLSLTPQPKAADAFNVPKKPVYVAIVLVLVIVAWYLGSMS |
Ga0209535_10148276 | F082525 | GAGG | MDYKINSGVPIPDAVSGKKRGRGKWQVLLSSMSEGDCVDIPNESYNSMYVAGSRLGIDLLSRREADGLADGFVRIWRVSDDD |
Ga0209535_10148277 | F015153 | AGGA | MKLQEIFDAASVHLMGMDGPSLDADGDACVYRGTVYDEYDDYELSGQMCAVGVFIADEHYSPDLEGQGIRRDRSVANAVAASWGQDYLTLDQISLLADLQDAHDETSRGSSLIPDHNWSKNIVASLDKVATKNHLRFDPNGASV |
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