NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1031413

Scaffold Ga0209535_1031413


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1031413 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2503
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → Mollicutes → Acholeplasmatales → Acholeplasmataceae → unclassified Acholeplasmataceae → Acholeplasmataceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004479Metagenome / Metatranscriptome436Y
F039875Metagenome / Metatranscriptome163N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10314132F004479AGGAMHNSKILVGNSGDKVYLQGNKVIKEAGHYPEKFKQQMDFLMCCDHPNFIDVKPLSETSYEMERYATWYDKILAQPLNTSIGQLESLISIIGKFDNVGSDVKTEDYFDKLQLRTGYTYEGKFDAISAWGFVHGDLTVSNILHHKDFLFIDPRGTEEQNYYDYGKLMQSFVMEYESHIYNNHNKTYSKFCKEAEKVMYEWCDEYQLKFFLAVHLLGAVPFFELNERYELAGSFLKKGHKLFDELEIKYSK
Ga0209535_10314134F039875N/AMENVKKVGFFKLGKAIKFNENSWGAIGGDCEPKQLINSIAKRNPNIEYWLLSPNDLGRVRAKEKPAVQSLFGDPVKAKSAAESNIHEFHSKMENRKSAEETVKLIKELDLDFIFFYTGPSSTVNIPNYINKKDGTGQVKSLDFFKYYAAPIIQAMNELEKKVPIVGLLVDNRYVLACKDWGINNRPTYYLAQ
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Institute for Fundamental Biomedical Research
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