NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1050652

Scaffold Ga0209535_1050652


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1050652 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1772
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F021188Metagenome220N
F046006Metagenome152N
F090883Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10506522F021188GGAGMEKIEELEIIWIPEEETKHSLTIENEQGVNELVDLPVSTVDRICKKKYGHTNWARMGAIFPEELGRNPHEIDYLEGIVYFKNSRMV
Ga0209535_10506525F000720GAGGMTLQDDKIMRHEIPNRMMSTTFTLPIDNRKVIGIVNYTAGAEGVIPMAFWVKIKPTDSYIDRELRASGKLISRCLQHGEDLKELAETLSQDNIIGQMVNYFNKNVEEIIMGAQPNKKQRMLSTDPYASQMKE
Ga0209535_10506526F046006GGAGGVKEYLGPLAKYINFILLLIILHFCITVMVVNFRYIDKLNNTIDTMWHEIEQVKDTNIQLYQFIEEHGNDITGR
Ga0209535_10506527F090883N/ARVRMVTIALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWREQGERILRAAGEIH
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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