Scaffold Ga0209535_1096293

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209535_1096293

Scaffold Ga0209535_1096293

Overview

Basic Information
Taxon OID	3300025120 Open in IMG/M
Scaffold ID	Ga0209535_1096293 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1073
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004990	Metagenome	416	Y
F008915	Metagenome / Metatranscriptome	326	Y
F079202	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10962931	F079202	AGGA	VKYFEKFDKDLINNRALNSHEKLIYIICKSFENAPRGCRISHKYL
Ga0209535_10962933	F004990	GGA	MYGDPKKPCCVCKKGADLNEKGKRYCADHYALHILGKSMEKIEKELKEIK
Ga0209535_10962934	F008915	N/A	TKTHNIHQEMVKFGVTTITKTSLWCCIIAQRKVMMESNSITLDLYEMQSAAHLGILRCLESKKNKESWGYNYKGSLNDQMAKSISGAMGEVAASKFLGIKFEYHCNVGGVPDLIFKDLKLQVRTQLPKDYNKNSLIIRPKAKPGELYILVIDEAPNFKILGFVNSTFVLGQEQWKTTFGLDRPFCYSIPPDKLTPIELLKNGTWN

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