Scaffold Ga0209434

Basic Information
Taxon OID	3300025122 Open in IMG/M
Scaffold ID	Ga0209434_1000732 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025122 Open in IMG/M

Scaffold ID

Ga0209434_1000732 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15364
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (82.76%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

15364

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (82.76%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)	Depth (m)	300
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-108.7999

Alt. (m)

Depth (m)

300

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017322	Metagenome	241	Y
F022523	Metagenome	214	Y
F026408	Metagenome / Metatranscriptome	198	Y
F048970	Metagenome	147	Y
F063091	Metagenome	130	Y
F081436	Metagenome / Metatranscriptome	114	Y
F101067	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209434_100073217	F048970	AGGA	MKIKKTRLQEIVRGVIKEAAKEGAIQKIYRRSFARMGKKVSSGGNKNTPPFTQKIPKIGKSGPPGD
Ga0209434_100073219	F026408	AGGA	LNRRGMTLLIVLVMSSLIGISAMLLFSTVNTETMIAGNTHRINQAKISAASGLSHFTALGLTYDTLRERAGDLQTLQILPETQLGAKTSYEVKVHFYPRLSERQYVVESTGYYKKADRIISVHPIKALFEGEQ
Ga0209434_100073220	F063091	GAGG	MIYKSLILLVFANLFNQAYNLEQIQCPRWVPGTDQVLPQGVSLSPELELENRVRCYCEVVKAKEAQCLARHVPATICKARTRAWVRDKLSIKEGFQLVKDVAPLPRRDRMISLEP
Ga0209434_100073222	F101067	N/A	MRVPTLDLHGLKHHEVQNAVARFIEDWLAKDLFVDIVTGNSEQMLFEAVKVIQQYGLQYNTGLPYHQGRIRVVMYDEYH
Ga0209434_100073225	F022523	AGG	MKIGDLVEFTYGRLGGQIEGMGIFMEYGTAGKHKVLFMGKGYWVPEQLIKPISIARKDPANEPLDN
Ga0209434_10007328	F081436	GGA	MKITKALLRTLIKETINEQGFRMETDFQPGQMVNWNVLAKVMKTTASGRQKVDYERMTMTGEVAELLTSGGAVGGVAIVMDPDGNSHEIEISELTLA
Ga0209434_10007329	F017322	GAGG	VSHKLIMENWRKFLKEGISDVVYHYTSGMGNAAKILEDNKFMASGGFTKEVETEYGKGKLYYFSTARTPVNAYTGTYPQGAIFKLDGRALAQKYKGVPLDYWATSKHSSKRPALISRYGKDAPSDSFEAEDRILLDEPYIDDADTYIDEIHFAVPLYKKEKDYFSGEPKRKTSKYIEWYNIEGIEKGVAVAEQRGIPYYIHVDKSTWPHVEVGKKKAFTSLSDFMQEIEKSGTEITGKPEGYGKETAAAKKRKTFGEDEVFLFVQAAHDILAGKEQFEGAGVKGDEDRTDEEARKAKGKSFFRQLAGHPDGRGRFVRDIDNPLHNISSKPKARGTLEMLASLMRSTKQKTIKDLENYLNQVYKKNHPDGDPTGYRDL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209434_1000732

Overview

Ecosystem & Geography

Associated Families

Sequences